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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
73874

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human COL1A1 HGNC:2197 (HGNC)
1277 (Entrez Gene)
120150 (OMIM)
HGNC homology
Chr17 q21.33 Chr17:50184096-50201648 (-)
GRCh38.p2
Caffey Disease
Collagen, Type I, Alpha-1; COL1A1
Ehlers-Danlos Syndrome, Classic Type
Ehlers-Danlos Syndrome, Type VII, Autosomal Dominant
Osteogenesis Imperfecta, Type III; OI3
Osteogenesis Imperfecta, Type II; OI2
Osteogenesis Imperfecta, Type I; OI1
Osteogenesis Imperfecta, Type IV; OI4
Osteoporosis
P02452 (UniProt | EBI)
NM_000088 (RefSeq)
mouse Col1a1 MGI:88467 (MGI)
12842 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr11 59.01 cM Chr11:94936224-94953042 (+)
GRCm38
Collagen, Type I, Alpha-1; COL1A1
Osteogenesis Imperfecta, Type III; OI3
Osteogenesis Imperfecta, Type II; OI2
Osteogenesis Imperfecta, Type I; OI1
Osteogenesis Imperfecta, Type IV; OI4
OTTMUSG00000002059 (VEGA)
OTTMUSP00000002001 (VEGA)
OTTMUST00000004184 (VEGA)
rat Col1a1 29393 (Entrez Gene)
Chr10 q26 P02454 (UniProt | EBI)
NM_053304 (RefSeq)
chimpanzee COL1A2 455117 (Entrez Gene)
Chr7 XP_001168894 (RefSeq)
cattle COL1A1 282187 (Entrez Gene)
Chr19 P02453 (UniProt | EBI)
NM_001034039 (RefSeq)
dog COL1A1 403651 (Entrez Gene)
Chr9 Q9XSJ7 (UniProt | EBI)
NM_001003090 (RefSeq)
zebrafish col1a1a 337158 (Entrez Gene)
Chr3 NP_954684 (RefSeq)
NM_199214 (RefSeq)
frog, western clawed col1a1 496414 (Entrez Gene)
Chr10 NP_001011005 (RefSeq)
NM_001011005 (RefSeq)
macaque, rhesus COL1A1 574201 (Entrez Gene)
Chr16 XP_014974804 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/29/2016
MGI 6.06
The Jackson Laboratory