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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
6960

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human TPK1 HGNC:17358 (HGNC)
27010 (Entrez Gene)
606370 (OMIM)
Chr7 q34-q35 Chr7:144451941-144836395 (-)
GRCh38
Thiamine Metabolism Dysfunction Syndrome 5 (episodic Encephalopathy Type); THMD5
Q9H3S4 (UniProt | EBI)
NM_022445 (RefSeq)
mouse Tpk1 MGI:1352500 (MGI)
29807 (Entrez Gene)
Gene Tree
VISTA-Point
Chr6 21.19 cM Chr6:43345001-43666278 (-)
GRCm38
OTTMUSG00000023547 (VEGA)
OTTMUSP00000027697 (VEGA)
OTTMUST00000057418 (VEGA)
rat Tpk1 680668 (Entrez Gene)
Chr4 q23 NP_001128466 (RefSeq)
NM_001134994 (RefSeq)
chimpanzee TPK1 463818 (Entrez Gene)
Chr7 XP_519461 (RefSeq)
rhesus macaque TPK1 706237 (Entrez Gene)
Chr3 XP_001094591 (RefSeq)
cattle TPK1 788066 (Entrez Gene)
Chr4 Q5E9T4 (UniProt | EBI)
NM_001080370 (RefSeq)
dog TPK1 475515 (Entrez Gene)
Chr16 XP_532737 (RefSeq)
chicken TPK1 420780 (Entrez Gene)
Chr2 XP_418875 (RefSeq)
western clawed frog tpk1 549924 (Entrez Gene)
ChrUN NP_001017170 (RefSeq)
NM_001017170 (RefSeq)
zebrafish tpk1 450054 (Entrez Gene)
Chr24 NP_001006074 (RefSeq)
NM_001006074 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory