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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 67, Dec 12, 2012)
69

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human COL1A2 HGNC:2198 (HGNC)
1278 (Entrez Gene)
120160 (OMIM)
Chr7 q22.1 Chr7:94394561-94431232 (+)
GRCh38
Ehlers-Danlos Syndrome, Autosomal Recessive, Cardiac Valvular Form
Ehlers-Danlos Syndrome, Type VII, Autosomal Dominant
Osteogenesis Imperfecta, Type II
Osteogenesis Imperfecta, Type III
Osteogenesis Imperfecta, Type IV
Osteoporosis
P08123 (UniProt | EBI)
NM_000089 (RefSeq)
mouse Col1a2 MGI:88468 (MGI)
12843 (Entrez Gene)
Gene Tree
VISTA-Point
Chr6 1.81 cM Chr6:4504814-4541543 (+)
GRCm38
Osteogenesis Imperfecta, Type III
OTTMUSG00000021300 (VEGA)
OTTMUSP00000023584 (VEGA)
OTTMUST00000050501 (VEGA)
rat Col1a2 84352 (Entrez Gene)
Chr4 q13 P02466 (UniProt | EBI)
NM_053356 (RefSeq)
chimpanzee COL1A2 463542 (Entrez Gene)
Chr7 XP_001168894 (RefSeq)
rhesus macaque COL1A2 700359 (Entrez Gene)
Chr3 NP_001253266 (RefSeq)
NM_001266337 (RefSeq)
cattle COL1A2 282188 (Entrez Gene)
Chr4 P02465 (UniProt | EBI)
NM_174520 (RefSeq)
dog COL1A2 403824 (Entrez Gene)
Chr14 O46392 (UniProt | EBI)
NM_001003187 (RefSeq)
chicken COL1A2 396243 (Entrez Gene)
Chr2 P02467 (UniProt | EBI)
NM_001079714 (RefSeq)
zebrafish col1a2 336471 (Entrez Gene)
Chr19 NP_892013 (RefSeq)
NM_182968 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory