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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
68548

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human POMT1 HGNC:9202 (HGNC)
10585 (Entrez Gene)
607423 (OMIM)
Chr9 q34.1 Chr9:131502895-131523806 (+)
GRCh38
Muscular Dystrophy-Dystroglycanopathy (congenital with Brain and Eye Anomalies), Type A, 1; MDDGA1
Muscular Dystrophy-Dystroglycanopathy (congenital with Mental Retardation), Type B, 1; MDDGB1
Muscular Dystrophy-Dystroglycanopathy (limb-Girdle), Type C, 1; MDDGC1
Q9Y6A1 (UniProt | EBI)
NM_007171 (RefSeq)
mouse Pomt1 MGI:2138994 (MGI)
99011 (Entrez Gene)
Gene Tree
VISTA-Point
Chr2 22.09 cM Chr2:32236590-32255005 (+)
GRCm38
OTTMUSG00000012947 (VEGA)
OTTMUSP00000013931 (VEGA)
OTTMUST00000031122 (VEGA)
rat Pomt1 84430 (Entrez Gene)
Chr3 p11 Q99PR0 (UniProt | EBI)
NM_053406 (RefSeq)
chimpanzee POMT1 473076 (Entrez Gene)
Chr9 NP_001233574 (RefSeq)
NM_001246645 (RefSeq)
rhesus macaque POMT1 722387 (Entrez Gene)
Chr15 XP_001118542 (RefSeq)
cattle POMT1 617609 (Entrez Gene)
Chr11 NP_001073799 (RefSeq)
NM_001080330 (RefSeq)
dog POMT1 608039 (Entrez Gene)
Chr9 XP_849854 (RefSeq)
chicken POMT1 417175 (Entrez Gene)
Chr17 NP_001025856 (RefSeq)
NM_001030685 (RefSeq)
western clawed frog pomt1 448433 (Entrez Gene)
ChrUN NP_001006756 (RefSeq)
NM_001006755 (RefSeq)
zebrafish pomt1 569769 (Entrez Gene)
Chr5 NP_001041532 (RefSeq)
NM_001048067 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory