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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
68535

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SHOX2 HGNC:10854 (HGNC)
6474 (Entrez Gene)
602504 (OMIM)
Chr3 q25.32 Chr3:158096011-158106163 (-)
GRCh38
O60902 (UniProt | EBI)
NM_003030 (RefSeq)
mouse Shox2 MGI:1201673 (MGI)
20429 (Entrez Gene)
Gene Tree
VISTA-Point
Chr3 30.76 cM Chr3:66971727-66981771 (-)
GRCm38
Langer Mesomelic Dysplasia; LMD
Leri-Weill Dyschondrosteosis; LWD
OTTMUSG00000042120 (VEGA)
OTTMUSP00000048652 (VEGA)
OTTMUST00000089115 (VEGA)
rat Shox2 25546 (Entrez Gene)
Chr2 q31 O35750 (UniProt | EBI)
NM_013028 (RefSeq)
chimpanzee SHOX2 460809 (Entrez Gene)
Chr3 XP_001153180 (RefSeq)
rhesus macaque SHOX2 704327 (Entrez Gene)
Chr2 XP_001102324 (RefSeq)
cattle SHOX2 525900 (Entrez Gene)
Chr1 NP_001192456 (RefSeq)
NM_001205527 (RefSeq)
dog SHOX2 485732 (Entrez Gene)
Chr23 XP_542854 (RefSeq)
chicken SHOX2 777244 (Entrez Gene)
Chr9 XP_003641845 (RefSeq)
zebrafish shox2 394171 (Entrez Gene)
Chr15 NP_957490 (RefSeq)
NM_201196 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory