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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
68473

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human HSPG2 HGNC:5273 (HGNC)
3339 (Entrez Gene)
142461 (OMIM)
Chr1 p36.1-p34 Chr1:21822244-21937257 (-)
GRCh38
Dyssegmental Dysplasia, Silverman-Handmaker Type; DDSH
Schwartz-Jampel Syndrome, Type 1; SJS1
P98160 (UniProt | EBI)
NM_005529 (RefSeq)
mouse Hspg2 MGI:96257 (MGI)
15530 (Entrez Gene)
Gene Tree
VISTA-Point
Chr4 69.93 cM Chr4:137468769-137570630 (+)
GRCm38
Dyssegmental Dysplasia, Silverman-Handmaker Type; DDSH
Schwartz-Jampel Syndrome, Type 1; SJS1
Thanatophoric Dysplasia, Type I; TD1
Transposition of the Great Arteries, Dextro-Looped 1; DTGA1
OTTMUSG00000009935 (VEGA)
OTTMUSP00000010529 (VEGA)
OTTMUST00000023078 (VEGA)
chimpanzee HSPG2 100613114 (Entrez Gene)
Chr1 XP_003949370 (RefSeq)
rhesus macaque HSPG2 707213 (Entrez Gene)
Chr1 XP_001099299 (RefSeq)
cattle HSPG2 444872 (Entrez Gene)
Chr2 XP_582024 (RefSeq)
dog HSPG2 403440 (Entrez Gene)
Chr2 XP_005617987 (RefSeq)
chicken HSPG2 429806 (Entrez Gene)
Chr21 NP_001001876 (RefSeq)
NM_001001876 (RefSeq)
western clawed frog hspg2 100494785 (Entrez Gene)
ChrUN XP_002942671 (RefSeq)
zebrafish hspg2 565429 (Entrez Gene)
Chr23 XP_003201256 (RefSeq)
NM_001127467 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/16/2014
MGI 5.19
The Jackson Laboratory