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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
68426

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human HDAC1 HGNC:4852 (HGNC)
3065 (Entrez Gene)
601241 (OMIM)
Chr1 p34 Chr1:32292107-32333623 (+)
GRCh38
Q13547 (UniProt | EBI)
NM_004964 (RefSeq)
mouse Hdac1 MGI:108086 (MGI)
433759 (Entrez Gene)
Gene Tree
VISTA-Point
Chr4 63.26 cM Chr4:129516104-129542713 (-)
GRCm38
OTTMUSG00000009661 (VEGA)
OTTMUSP00000010171 (VEGA)
OTTMUST00000022290 (VEGA)
rat Hdac1 297893 (Entrez Gene)
Chr5 q36 Q4QQW4 (UniProt | EBI)
NM_001025409 (RefSeq)
chimpanzee HDAC1 464259 (Entrez Gene)
Chr1
HDAC1 748850 (Entrez Gene)
Chr1 XP_001162233 (RefSeq)
rhesus macaque LOC708441 708441 (Entrez Gene)
Chr1 XP_001096929 (RefSeq)
cattle HDAC1 404126 (Entrez Gene)
Chr2 Q32PJ8 (UniProt | EBI)
NM_001037444 (RefSeq)
dog HDAC1 487309 (Entrez Gene)
Chr2 XP_544435 (RefSeq)
chicken HDAC1 373961 (Entrez Gene)
Chr23 P56517 (UniProt | EBI)
NM_204156 (RefSeq)
western clawed frog hdac1 594953 (Entrez Gene)
ChrUN NP_001025564 (RefSeq)
NM_001030393 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory