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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
68296

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SMARCC1 HGNC:11104 (HGNC)
6599 (Entrez Gene)
601732 (OMIM)
SMARCC1 (MyGene.info)
HGNC homology
Chr3 p21.31 Chr3:47585888-47781915 (-)
GRCh38.p7
Q92922 (UniProt | EBI)
NM_003074 (RefSeq)
mouse Smarcc1 MGI:1203524 (MGI)
20588 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr9 59.87 cM Chr9:110132024-110240178 (+)
GRCm38
20588 (NCBI Gene Model)
P97496 (UniProt | EBI)
NM_009211 (RefSeq)
rat Smarcc1 301020 (Entrez Gene)
Chr8 q32 NP_001100331 (RefSeq)
NM_001106861 (RefSeq)
chimpanzee SMARCC1 460337 (Entrez Gene)
Chr3 XP_016796446 (RefSeq)
cattle SMARCC1 522045 (Entrez Gene)
Chr22 XP_024839053 (RefSeq)
dog SMARCC1 476640 (Entrez Gene)
Chr20 XP_013977658 (RefSeq)
chicken SMARCC1 420378 (Entrez Gene)
Chr2 XP_015136656 (RefSeq)
zebrafish smarcc1a 403020 (Entrez Gene)
Chr16 XP_005158339 (RefSeq)
frog, western clawed smarcc1 100188924 (Entrez Gene)
Chr6 XP_002942764 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
09/08/2020
MGI 6.15
The Jackson Laboratory