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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
68290

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SCTR HGNC:10608 (HGNC)
6344 (Entrez Gene)
182098 (OMIM)
Chr2 q14.1 Chr2:119439843-119524452 (-)
GRCh38
P47872 (UniProt | EBI)
NM_002980 (RefSeq)
mouse Sctr MGI:2441720 (MGI)
319229 (Entrez Gene)
Gene Tree
VISTA-Point
Chr1 52.57 cM Chr1:120006894-120063536 (+)
GRCm38
OTTMUSG00000049072 (VEGA)
OTTMUSP00000067979 (VEGA)
OTTMUST00000125325 (VEGA)
rat Sctr 81779 (Entrez Gene)
Chr13 P23811 (UniProt | EBI)
NM_031115 (RefSeq)
chimpanzee SCTR 459576 (Entrez Gene)
Chr2B XP_515761 (RefSeq)
rhesus macaque SCTR 695182 (Entrez Gene)
Chr13 XP_001083803 (RefSeq)
cattle SCTR 523291 (Entrez Gene)
Chr2 NP_001092491 (RefSeq)
NM_001099021 (RefSeq)
dog SCTR 483883 (Entrez Gene)
Chr19 XP_541003 (RefSeq)
chicken SCTR 770943 (Entrez Gene)
Chr7 NP_001165013 (RefSeq)
NM_001171542 (RefSeq)
zebrafish sctr 100537567 (Entrez Gene)
Chr9 NP_001243568 (RefSeq)
NM_001256639 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory