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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
66151

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human USH2A HGNC:12601 (HGNC)
7399 (Entrez Gene)
608400 (OMIM)
Chr1 q41 Chr1:215622894-216423396 (-)
GRCh38
Retinitis Pigmentosa 39; RP39
Usher Syndrome, Type IIA; USH2A
O75445 (UniProt | EBI)
NM_007123 (RefSeq)
mouse Ush2a MGI:1341292 (MGI)
22283 (Entrez Gene)
Gene Tree
VISTA-Point
Chr1 92.29 cM Chr1:188262023-188965041 (+)
GRCm38
Usher Syndrome, Type IIA; USH2A
OTTMUSG00000018252 (VEGA)
OTTMUSP00000019826 (VEGA)
OTTMUST00000044109 (VEGA)
rat Ush2a 289369 (Entrez Gene)
Chr13 q26 Q8K3K1 (UniProt | EBI)
NM_172048 (RefSeq)
chimpanzee USH2A 457736 (Entrez Gene)
Chr1 XP_514197 (RefSeq)
rhesus macaque USH2A 708278 (Entrez Gene)
Chr1 XP_002801987 (RefSeq)
cattle USH2A 100296635 (Entrez Gene)
Chr16 NP_001178354 (RefSeq)
NM_001191425 (RefSeq)
dog USH2A 488593 (Entrez Gene)
Chr38 XP_545710 (RefSeq)
chicken USH2A 421358 (Entrez Gene)
Chr3 XP_419417 (RefSeq)
zebrafish ush2a 568982 (Entrez Gene)
Chr17 XP_697435 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory