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HomoloGene Vertebrate Homology
Class ID
HomoloGene (Release 68, May 6, 2014)

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human USH2A HGNC:12601 (HGNC)
7399 (Entrez Gene)
608400 (OMIM)
USH2A (MyGene.info)
HGNC homology
Chr1 q41 Chr1:215622894-216423396 (-)
retinitis pigmentosa 39
Usher syndrome type 2A
O75445 (UniProt | EBI)
NM_007123 (RefSeq)
mouse Ush2a MGI:1341292 (MGI)
22283 (Entrez Gene)
Gene Tree
HGNC homology
Chr1 92.29 cM Chr1:188262838-188965497 (+)
Usher syndrome type 2A
22283 (NCBI Gene Model)
Q2QI47 (UniProt | EBI)
NM_021408 (RefSeq)
rat Ush2a 289369 (Entrez Gene)
Chr13 q26 Q8K3K1 (UniProt | EBI)
NM_001302219 (RefSeq)
chimpanzee USH2A 457736 (Entrez Gene)
Chr1 XP_016794151 (RefSeq)
cattle USH2A 100296635 (Entrez Gene)
Chr16 NP_001178354 (RefSeq)
NM_001191425 (RefSeq)
dog USH2A 488593 (Entrez Gene)
Chr38 XP_545710 (RefSeq)
chicken USH2A 421358 (Entrez Gene)
Chr3 XP_419417 (RefSeq)
zebrafish ush2a 568982 (Entrez Gene)
Chr17 XP_009291422 (RefSeq)
macaque, rhesus USH2A 708278 (Entrez Gene)
Chr1 XP_014971755 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
MGI 6.14
The Jackson Laboratory