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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
62161

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human VANGL2 HGNC:15511 (HGNC)
57216 (Entrez Gene)
600533 (OMIM)
Chr1 q22-q23 Chr1:160400574-160428678 (+)
GRCh38
Neural Tube Defects
Q9ULK5 (UniProt | EBI)
NM_020335 (RefSeq)
mouse Vangl2 MGI:2135272 (MGI)
93840 (Entrez Gene)
Gene Tree
VISTA-Point
Chr1 79.54 cM Chr1:172000960-172028444 (-)
GRCm38
Neural Tube Defects
OTTMUSG00000021582 (VEGA)
OTTMUSP00000024061 (VEGA)
OTTMUST00000051231 (VEGA)
rat Vangl2 289229 (Entrez Gene)
Chr13 q24 P84889 (UniProt | EBI)
NM_001105969 (RefSeq)
chimpanzee VANGL2 745757 (Entrez Gene)
Chr1 XP_009434635 (RefSeq)
rhesus macaque VANGL2 720239 (Entrez Gene)
Chr1 XP_001115459 (RefSeq)
cattle VANGL2 520544 (Entrez Gene)
Chr3 NP_001192804 (RefSeq)
NM_001205875 (RefSeq)
chicken VANGL2 426903 (Entrez Gene)
Chr25 XP_424509 (RefSeq)
western clawed frog vangl2 613073 (Entrez Gene)
ChrUN Q4VBG5 (UniProt | EBI)
NM_001032310 (RefSeq)
zebrafish vangl2 245949 (Entrez Gene)
Chr7 Q8UVJ6 (UniProt | EBI)
NM_153674 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory