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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
5791

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human ATP13A1 HGNC:24215 (HGNC)
57130 (Entrez Gene)
HGNC homology
Chr19 p13.11 Chr19:19645198-19663694 (-)
GRCh38.p7
Q9HD20 (UniProt | EBI)
NM_020410 (RefSeq)
mouse Atp13a1 MGI:2180801 (MGI)
170759 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr8 33.88 cM Chr8:69791163-69807749 (+)
GRCm38
170759 (NCBI Gene Model)
Q9EPE9 (UniProt | EBI)
NM_133224 (RefSeq)
rat Atp13a1 290673 (Entrez Gene)
Chr16 p14 NP_001099549 (RefSeq)
NM_001106079 (RefSeq)
chimpanzee ATP13A1 455881 (Entrez Gene)
Chr19 XP_003316269 (RefSeq)
cattle ATP13A1 534369 (Entrez Gene)
Chr7 NP_001179738 (RefSeq)
NM_001192809 (RefSeq)
dog ATP13A1 476658 (Entrez Gene)
Chr20 XP_533862 (RefSeq)
chicken ATP13A1 426090 (Entrez Gene)
ChrUN XP_004950884 (RefSeq)
zebrafish atp13a1 334466 (Entrez Gene)
Chr3 NP_001001403 (RefSeq)
NM_001001403 (RefSeq)
frog, western clawed atp13a1 100158629 (Entrez Gene)
Chr3 NP_001121512 (RefSeq)
NM_001128040 (RefSeq)
macaque, rhesus ATP13A1 100427506 (Entrez Gene)
Chr19 XP_014978890 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
02/13/2018
MGI 6.11
The Jackson Laboratory