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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
56589

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PTPN6 HGNC:9658 (HGNC)
5777 (Entrez Gene)
176883 (OMIM)
PTPN6 (MyGene.info)
HGNC homology
Chr12 p13.31 Chr12:6946576-6961316 (+)
GRCh38.p7
P29350 (UniProt | EBI)
NM_080548 (RefSeq)
mouse Ptpn6 MGI:96055 (MGI)
15170 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr6 59.17 cM Chr6:124720707-124738709 (-)
GRCm38
15170 (NCBI Gene Model)
P29351 (UniProt | EBI)
NM_001077705 (RefSeq)
rat Ptpn6 116689 (Entrez Gene)
Chr4 q42 P81718 (UniProt | EBI)
NM_053908 (RefSeq)
chimpanzee PTPN6 748032 (Entrez Gene)
Chr12 XP_009423007 (RefSeq)
cattle PTPN6 512312 (Entrez Gene)
Chr5 NP_001091486 (RefSeq)
NM_001098017 (RefSeq)
dog PTPN6 486717 (Entrez Gene)
Chr27 XP_005637268 (RefSeq)
chicken PTPN6 427947 (Entrez Gene)
Chr1 NP_001026655 (RefSeq)
NM_001031484 (RefSeq)
zebrafish ptpn6 335573 (Entrez Gene)
Chr16 NP_956254 (RefSeq)
NM_199960 (RefSeq)
frog, western clawed ptpn6 100144699 (Entrez Gene)
Chr7 NP_001116928 (RefSeq)
NM_001123456 (RefSeq)
macaque, rhesus PTPN6 714374 (Entrez Gene)
Chr11 XP_015006432 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
08/06/2019
MGI 6.14
The Jackson Laboratory