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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 67, Dec 12, 2012)
56389

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human COL11A1 HGNC:2186 (HGNC)
1301 (Entrez Gene)
120280 (OMIM)
Chr1 p21 Chr1:102876467-103108496 (-)
GRCh38
Fibrochondrogenesis 1; FBCG1
Intervertebral Disc Disease; IDD
Marshall Syndrome; MRSHS
Stickler Syndrome, Type II; STL2
P12107 (UniProt | EBI)
NM_001854 (RefSeq)
mouse Col11a1 MGI:88446 (MGI)
12814 (Entrez Gene)
Gene Tree
VISTA-Point
Chr3 49.35 cM Chr3:114030540-114220718 (+)
GRCm38
Marshall Syndrome; MRSHS
Stickler Syndrome, Type II; STL2
OTTMUSG00000022509 (VEGA)
OTTMUSP00000025652 (VEGA)
OTTMUST00000053888 (VEGA)
rat Col11a1 25654 (Entrez Gene)
Chr2 q41 P20909 (UniProt | EBI)
NM_013117 (RefSeq)
chimpanzee COL11A1 457065 (Entrez Gene)
Chr1 XP_001139807 (RefSeq)
rhesus macaque LOC712753 712753 (Entrez Gene)
Chr1 XP_002808276 (RefSeq)
cattle COL11A1 287013 (Entrez Gene)
Chr3 Q28083 (UniProt | EBI)
NM_001166509 (RefSeq)
dog COL11A1 100685969 (Entrez Gene)
Chr6 XP_005621909 (RefSeq)
chicken COL11A1 374046 (Entrez Gene)
Chr8 XP_001231624 (RefSeq)
zebrafish col11a1a 565402 (Entrez Gene)
Chr24 NP_001077313 (RefSeq)
NM_001083844 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory