About   Help   FAQ
HomoloGene Vertebrate Homology
Class ID
HomoloGene (Release 68, May 6, 2014)

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
select all deselect all Go
human COL11A1 HGNC:2186 (HGNC)
1301 (Entrez Gene)
120280 (OMIM)
HGNC homology
Chr1 p21.1 Chr1:102876467-103108580 (-)
Stickler syndrome
P12107 (UniProt | EBI)
NM_001190709 (RefSeq)
mouse Col11a1 MGI:88446 (MGI)
12814 (Entrez Gene)
Gene Tree
HGNC homology
Chr3 49.35 cM Chr3:114030540-114220718 (+)
Stickler syndrome
OTTMUSG00000022509 (VEGA)
OTTMUSP00000025652 (VEGA)
OTTMUST00000053888 (VEGA)
rat Col11a1 25654 (Entrez Gene)
Chr2 q41 P20909 (UniProt | EBI)
NM_013117 (RefSeq)
chimpanzee COL11A1 457065 (Entrez Gene)
Chr1 XP_001140143 (RefSeq)
cattle COL11A1 287013 (Entrez Gene)
Chr3 Q28083 (UniProt | EBI)
NM_001166509 (RefSeq)
dog COL11A1 100685969 (Entrez Gene)
Chr6 XP_005621911 (RefSeq)
chicken COL11A1 374046 (Entrez Gene)
Chr8 XP_015146288 (RefSeq)
zebrafish col11a1a 565402 (Entrez Gene)
Chr24 NP_001077313 (RefSeq)
NM_001083844 (RefSeq)
frog, western clawed col5a3 733808 (Entrez Gene)
Chr4 XP_004913771 (RefSeq)
macaque, rhesus COL11A1 712753 (Entrez Gene)
Chr1 XP_015001498 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
MGI 6.12
The Jackson Laboratory