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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
56240

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human CHMP1A HGNC:8740 (HGNC)
5119 (Entrez Gene)
164010 (OMIM)
Chr16 q24.3 Chr16:89644431-89657785 (-)
GRCh38
Pontocerebellar Hypoplasia, Type 8; PCH8
Q9HD42 (UniProt | EBI)
NM_002768 (RefSeq)
mouse Chmp1a MGI:1920159 (MGI)
234852 (Entrez Gene)
Gene Tree
VISTA-Point
Chr8 72.08 cM Chr8:123204264-123212763 (-)
GRCm38
OTTMUSG00000036037 (VEGA)
OTTMUSP00000051142 (VEGA)
OTTMUST00000092503 (VEGA)
rat Chmp1a 365024 (Entrez Gene)
Chr19 q12 NP_001076782 (RefSeq)
NM_001083313 (RefSeq)
rhesus macaque CHMP1A 714304 (Entrez Gene)
Chr20 NP_001078827 (RefSeq)
NM_001085358 (RefSeq)
cattle CHMP1A 789414 (Entrez Gene)
Chr18 NP_001178189 (RefSeq)
NM_001191260 (RefSeq)
dog CHMP1A 489656 (Entrez Gene)
Chr5 XP_546776 (RefSeq)
chicken CHMP1A 415841 (Entrez Gene)
Chr11 NP_001020611 (RefSeq)
NM_001025440 (RefSeq)
western clawed frog chmp1a 100216166 (Entrez Gene)
ChrUN NP_001135608 (RefSeq)
NM_001142136 (RefSeq)
zebrafish chmp1a 393535 (Entrez Gene)
Chr25 Q6PHF0 (UniProt | EBI)
NM_200563 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory