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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
5605

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human VPS54 HGNC:18652 (HGNC)
51542 (Entrez Gene)
614633 (OMIM)
Chr2 p13-p14 Chr2:63892146-64019355 (-)
GRCh38
Q9P1Q0 (UniProt | EBI)
NM_001005739 (RefSeq)
mouse Vps54 MGI:2178798 (MGI)
245944 (Entrez Gene)
Gene Tree
VISTA-Point
Chr11 13.89 cM Chr11:21239281-21321136 (+)
GRCm38
Amyotrophic Lateral Sclerosis 1; ALS1
Spinal Muscular Atrophy, Type I; SMA1
OTTMUSG00000005242 (VEGA)
OTTMUSP00000005421 (VEGA)
OTTMUST00000011688 (VEGA)
rat Vps54 286932 (Entrez Gene)
Chr14 q22 Q9JMK8 (UniProt | EBI)
NM_173147 (RefSeq)
chimpanzee VPS54 459274 (Entrez Gene)
Chr2A XP_001165006 (RefSeq)
rhesus macaque VPS54 695397 (Entrez Gene)
Chr13 NP_001247947 (RefSeq)
NM_001261018 (RefSeq)
cattle VPS54 783762 (Entrez Gene)
Chr11 NP_001098930 (RefSeq)
NM_001105460 (RefSeq)
dog VPS54 474616 (Entrez Gene)
Chr10 XP_865972 (RefSeq)
chicken VPS54 421280 (Entrez Gene)
Chr3 XP_419349 (RefSeq)
western clawed frog vps54 100380095 (Entrez Gene)
ChrUN XP_002939365 (RefSeq)
zebrafish vps54 562169 (Entrez Gene)
Chr1 NP_001124248 (RefSeq)
NM_001130776 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory