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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
56

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human CD40LG HGNC:11935 (HGNC)
959 (Entrez Gene)
300386 (OMIM)
ChrX q26 ChrX:136648177-136660390 (+)
GRCh38
Immunodeficiency with Hyper-IgM, Type 1; HIGM1
P29965 (UniProt | EBI)
NM_000074 (RefSeq)
mouse Cd40lg MGI:88337 (MGI)
21947 (Entrez Gene)
Gene Tree
VISTA-Point
ChrX 31.21 cM ChrX:57212143-57224042 (+)
GRCm38
OTTMUSG00000017791 (VEGA)
OTTMUSP00000019349 (VEGA)
OTTMUST00000043051 (VEGA)
rat Cd40lg 84349 (Entrez Gene)
ChrX q36 Q9Z2V2 (UniProt | EBI)
NM_053353 (RefSeq)
chimpanzee CD40LG 473802 (Entrez Gene)
ChrX XP_529175 (RefSeq)
rhesus macaque CD40LG 574160 (Entrez Gene)
ChrX P63304 (UniProt | EBI)
NM_001032839 (RefSeq)
cattle CD40LG 282387 (Entrez Gene)
ChrX P51749 (UniProt | EBI)
NM_174624 (RefSeq)
dog CD40LG 403468 (Entrez Gene)
ChrX O97626 (UniProt | EBI)
NM_001002981 (RefSeq)
chicken CD40LG 395485 (Entrez Gene)
Chr4 Q9I8D8 (UniProt | EBI)
NM_204733 (RefSeq)
western clawed frog cd40lg 100489038 (Entrez Gene)
ChrUN XP_002932670 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/16/2014
MGI 5.19
The Jackson Laboratory