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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 67, Dec 12, 2012)
55712

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SMARCA4 HGNC:11100 (HGNC)
6597 (Entrez Gene)
603254 (OMIM)
Chr19 p13.2 Chr19:10960922-11062282 (+)
GRCh38
Mental Retardation, Autosomal Dominant 16; MRD16
Rhabdoid Tumor Predisposition Syndrome 2; RTPS2
P51532 (UniProt | EBI)
NM_003072 (RefSeq)
mouse Smarca4 MGI:88192 (MGI)
20586 (Entrez Gene)
Gene Tree
VISTA-Point
Chr9 7.84 cM Chr9:21616169-21704217 (+)
GRCm38
OTTMUSG00000037140 (VEGA)
OTTMUSP00000053360 (VEGA)
OTTMUST00000095628 (VEGA)
rat Smarca4 171379 (Entrez Gene)
Chr8 q13 Q8K1P7 (UniProt | EBI)
NM_134368 (RefSeq)
chimpanzee SMARCA4 455720 (Entrez Gene)
Chr19 XP_512384 (RefSeq)
rhesus macaque SMARCA4 716067 (Entrez Gene)
Chr19 XP_002808217 (RefSeq)
cattle SMARCA4 414274 (Entrez Gene)
Chr7 A7Z019 (UniProt | EBI)
NM_001105614 (RefSeq)
dog SMARCA4 476710 (Entrez Gene)
Chr20 XP_005632927 (RefSeq)
zebrafish smarca4a 353295 (Entrez Gene)
Chr3 NP_853634 (RefSeq)
NM_181603 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory