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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
55434

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human COL5A1 HGNC:2209 (HGNC)
1289 (Entrez Gene)
120215 (OMIM)
HGNC homology
Chr9 q34.3 Chr9:134641790-134844843 (+)
GRCh38.p7
type I Ehlers-Danlos syndrome
P20908 (UniProt | EBI)
NM_000093 (RefSeq)
mouse Col5a1 MGI:88457 (MGI)
12831 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr2 19.38 cM Chr2:27886425-28039514 (+)
GRCm38
type I Ehlers-Danlos syndrome
ENSMUSG00000026837 (Ensembl Gene Model)
ENSMUSP00000028280 (Ensembl)
ENSMUST00000028280 (Ensembl)
rat Col5a1 85490 (Entrez Gene)
Chr3 p12 Q9JI03 (UniProt | EBI)
NM_134452 (RefSeq)
chicken COL5A1 395568 (Entrez Gene)
Chr17 NP_990121 (RefSeq)
NM_204790 (RefSeq)
zebrafish col5a1 100334431 (Entrez Gene)
Chr21 XP_021324674 (RefSeq)
frog, western clawed col5a1 100038277 (Entrez Gene)
ChrUN XP_004916702 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
07/09/2019
MGI 6.14
The Jackson Laboratory