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HomoloGene Vertebrate Homology
Class ID
HomoloGene (Release 68, May 6, 2014)

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human COL3A1 HGNC:2201 (HGNC)
1281 (Entrez Gene)
120180 (OMIM)
HGNC homology
Chr2 q31 Chr2:188974373-189012746 (+)
Ehlers-Danlos Syndrome, Hypermobility Type
Ehlers-Danlos Syndrome, Type IV, Autosomal Dominant
P02461 (UniProt | EBI)
NM_000090 (RefSeq)
mouse Col3a1 MGI:88453 (MGI)
12825 (Entrez Gene)
Gene Tree
HGNC homology
Chr1 23.67 cM Chr1:45311538-45349706 (+)
Ehlers-Danlos Syndrome, Type IV, Autosomal Dominant
Scleroderma, Familial Progressive
OTTMUSG00000021335 (VEGA)
OTTMUSP00000023637 (VEGA)
OTTMUST00000050577 (VEGA)
rat Col3a1 84032 (Entrez Gene)
Chr9 q22 P13941 (UniProt | EBI)
NM_032085 (RefSeq)
chimpanzee COL3A1 459815 (Entrez Gene)
Chr2B XP_001163809 (RefSeq)
rhesus macaque COL3A1 574131 (Entrez Gene)
Chr12 NP_001252968 (RefSeq)
NM_001266039 (RefSeq)
chicken COL3A1 396340 (Entrez Gene)
Chr7 P12105 (UniProt | EBI)
NM_205380 (RefSeq)
western clawed frog col3a1 100124865 (Entrez Gene)
ChrUN NP_001136379 (RefSeq)
NM_001142907 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
MGI 6.04
The Jackson Laboratory