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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
5424

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human TDP1 HGNC:18884 (HGNC)
55775 (Entrez Gene)
607198 (OMIM)
TDP1 (MyGene.info)
HGNC homology
Chr14 q32.11 Chr14:89954935-90044764 (+)
GRCh38.p7
spinocerebellar ataxia type 1 with axonal neuropathy
Q9NUW8 (UniProt | EBI)
NM_001008744 (RefSeq)
mouse Tdp1 MGI:1920036 (MGI)
104884 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr12 50.43 cM Chr12:99884517-99955219 (+)
GRCm38
spinocerebellar ataxia type 1 with axonal neuropathy
ENSMUSG00000021177 (Ensembl Gene Model)
ENSMUSP00000118656 (Ensembl)
ENSMUST00000153627 (Ensembl)
rat Tdp1 314380 (Entrez Gene)
Chr6 q32 Q4G056 (UniProt | EBI)
NM_001031657 (RefSeq)
chimpanzee TDP1 453096 (Entrez Gene)
Chr14 NP_001233557 (RefSeq)
NM_001246628 (RefSeq)
cattle TDP1 517053 (Entrez Gene)
Chr10 NP_001180084 (RefSeq)
NM_001193155 (RefSeq)
dog TDP1 490828 (Entrez Gene)
Chr8 XP_022278027 (RefSeq)
chicken TDP1 423403 (Entrez Gene)
Chr5 XP_025006771 (RefSeq)
zebrafish tdp1 571485 (Entrez Gene)
Chr17 XP_700174 (RefSeq)
frog, western clawed tdp1 734106 (Entrez Gene)
Chr8 NP_001039242 (RefSeq)
NM_001045777 (RefSeq)
macaque, rhesus TDP1 695338 (Entrez Gene)
Chr7 NP_001244708 (RefSeq)
NM_001257779 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
11/12/2019
MGI 6.14
The Jackson Laboratory