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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
5368

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PRPF6 HGNC:15860 (HGNC)
24148 (Entrez Gene)
613979 (OMIM)
Chr20 q13.33 Chr20:63981064-64033100 (+)
GRCh38
Retinitis Pigmentosa 60; RP60
O94906 (UniProt | EBI)
NM_012469 (RefSeq)
mouse Prpf6 MGI:1922946 (MGI)
68879 (Entrez Gene)
Gene Tree
VISTA-Point
Chr2 103.67 cM Chr2:181591868-181655651 (+)
GRCm38
OTTMUSG00000016808 (VEGA)
OTTMUSP00000018255 (VEGA)
OTTMUST00000040822 (VEGA)
rat Prpf6 366276 (Entrez Gene)
Chr3 q43 A1A5S1 (UniProt | EBI)
NM_001079766 (RefSeq)
chimpanzee PRPF6 458425 (Entrez Gene)
Chr20 XP_001152053 (RefSeq)
cattle PRPF6 534228 (Entrez Gene)
Chr13 Q2KJJ0 (UniProt | EBI)
NM_001046375 (RefSeq)
dog PRPF6 477289 (Entrez Gene)
Chr24 XP_534481 (RefSeq)
chicken PRPF6 419254 (Entrez Gene)
Chr20 XP_417426 (RefSeq)
western clawed frog prpf6 595030 (Entrez Gene)
ChrUN NP_001025642 (RefSeq)
NM_001030471 (RefSeq)
zebrafish prpf6 323855 (Entrez Gene)
Chr23 NP_997820 (RefSeq)
NM_212655 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory