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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
52

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human CAPN3 HGNC:1480 (HGNC)
825 (Entrez Gene)
114240 (OMIM)
CAPN3 (MyGene.info)
HGNC homology
Chr15 q15.1 Chr15:42359500-42412317 (+)
GRCh38.p7
autosomal recessive limb-girdle muscular dystrophy type 2A
P20807 (UniProt | EBI)
NM_173090 (RefSeq)
mouse Capn3 MGI:107437 (MGI)
12335 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr2 60.31 cM Chr2:120456019-120504913 (+)
GRCm38
autosomal recessive limb-girdle muscular dystrophy type 2A
OTTMUSG00000015381 (VEGA)
OTTMUSP00000016396 (VEGA)
OTTMUST00000036492 (VEGA)
rat Capn3 29155 (Entrez Gene)
Chr3 q35 P16259 (UniProt | EBI)
NM_017117 (RefSeq)
cattle CAPN3 281663 (Entrez Gene)
Chr10 P51186 (UniProt | EBI)
NM_174260 (RefSeq)
dog CAPN3 100856545 (Entrez Gene)
Chr30 XP_013964957 (RefSeq)
chicken CAPN3 423233 (Entrez Gene)
Chr5 Q92177 (UniProt | EBI)
NM_001004405 (RefSeq)
zebrafish capn3a 447832 (Entrez Gene)
Chr17 NP_001004571 (RefSeq)
NM_001004571 (RefSeq)
frog, western clawed capn3 100497532 (Entrez Gene)
Chr8 XP_012824748 (RefSeq)
macaque, rhesus CAPN3 707913 (Entrez Gene)
Chr7 XP_014997518 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/05/2017
MGI 6.11
The Jackson Laboratory