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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
50501

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human RAPGEF1 HGNC:4568 (HGNC)
2889 (Entrez Gene)
600303 (OMIM)
RAPGEF1 (MyGene.info)
HGNC homology
Chr9 q34.13 Chr9:131576770-131740068 (-)
GRCh38.p7
Q13905 (UniProt | EBI)
NM_198679 (RefSeq)
mouse Rapgef1 MGI:104580 (MGI)
107746 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr2 20.32 cM Chr2:29619720-29740364 (+)
GRCm38
107746 (NCBI Gene Model)
NP_001034176 (RefSeq)
NM_001039087 (RefSeq)
rat Rapgef1 63881 (Entrez Gene)
Chr3 p12 XP_008759908 (RefSeq)
chimpanzee RAPGEF1 464812 (Entrez Gene)
Chr9 XP_024201696 (RefSeq)
cattle RAPGEF1 520454 (Entrez Gene)
Chr11 NP_001192801 (RefSeq)
NM_001205872 (RefSeq)
dog RAPGEF1 491286 (Entrez Gene)
Chr9 XP_005625276 (RefSeq)
chicken RAPGEF1 417173 (Entrez Gene)
Chr17 XP_015135231 (RefSeq)
zebrafish rapgef1a 558635 (Entrez Gene)
Chr8 XP_009302065 (RefSeq)
frog, western clawed rapgef1 733953 (Entrez Gene)
Chr8 NP_001039130 (RefSeq)
NM_001045665 (RefSeq)
macaque, rhesus RAPGEF1 715272 (Entrez Gene)
Chr15 XP_014972007 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
08/13/2019
MGI 6.14
The Jackson Laboratory