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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
495

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human TAP1 HGNC:43 (HGNC)
6890 (Entrez Gene)
170260 (OMIM)
Chr6 p21.3 Chr6:32845209-32853971 (-)
GRCh38
Bare Lymphocyte Syndrome, Type I
Q03518 (UniProt | EBI)
NM_000593 (RefSeq)
mouse Tap1 MGI:98483 (MGI)
21354 (Entrez Gene)
Gene Tree
VISTA-Point
Chr17 17.98 cM Chr17:34187553-34197225 (+)
GRCm38
OTTMUSG00000036473 (VEGA)
OTTMUSP00000051841 (VEGA)
OTTMUST00000093466 (VEGA)
rat Tap1 24811 (Entrez Gene)
Chr20 p12 P36370 (UniProt | EBI)
NM_032055 (RefSeq)
chimpanzee TAP1 471978 (Entrez Gene)
Chr6 XP_001166911 (RefSeq)
rhesus macaque TAP1 717726 (Entrez Gene)
Chr4 XP_001115506 (RefSeq)
cattle TAP1 524959 (Entrez Gene)
Chr23 NP_001091527 (RefSeq)
NM_001098058 (RefSeq)
dog TAP1 474866 (Entrez Gene)
Chr12 NP_001271425 (RefSeq)
NM_001284496 (RefSeq)
chicken TAP1 427727 (Entrez Gene)
Chr16 NP_001129440 (RefSeq)
NM_001135968 (RefSeq)
western clawed frog LOC100488534 100488534 (Entrez Gene)
ChrUN XP_002942646 (RefSeq)
zebrafish tap1 100333043 (Entrez Gene)
Chr16 XP_002665053 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory