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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
48353

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SCARB2 HGNC:1665 (HGNC)
950 (Entrez Gene)
602257 (OMIM)
Chr4 q21.1 Chr4:76158737-76213899 (-)
GRCh38
Epilepsy, Progressive Myoclonic 4, with or without Renal Failure;
Q14108 (UniProt | EBI)
NM_005506 (RefSeq)
mouse Scarb2 MGI:1196458 (MGI)
12492 (Entrez Gene)
Gene Tree
VISTA-Point
Chr5 46.82 cM Chr5:92443873-92505608 (-)
GRCm38
12492 (NCBI Gene Model)
O35114 (UniProt | EBI)
NM_007644 (RefSeq)
rat Scarb2 117106 (Entrez Gene)
Chr14 p22 P27615 (UniProt | EBI)
NM_054001 (RefSeq)
chimpanzee SCARB2 461239 (Entrez Gene)
Chr4 XP_517214 (RefSeq)
rhesus macaque SCARB2 699990 (Entrez Gene)
Chr5 XP_001096458 (RefSeq)
cattle SCARB2 533177 (Entrez Gene)
Chr6 NP_001095623 (RefSeq)
NM_001102153 (RefSeq)
dog SCARB2 478435 (Entrez Gene)
Chr32 XP_005639134 (RefSeq)
chicken SCARB2 422638 (Entrez Gene)
Chr4 XP_420593 (RefSeq)
western clawed frog scarb2 549311 (Entrez Gene)
ChrUN NP_001016557 (RefSeq)
NM_001016557 (RefSeq)
zebrafish LOC564077 564077 (Entrez Gene)
ChrUN XP_003200850 (RefSeq)
LOC100536792 100536792 (Entrez Gene)
Chr5
scarb2 192340 (Entrez Gene)
Chr5 NP_775366 (RefSeq)
NM_173259 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory