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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
45157

 
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SPECC1 HGNC:30615 (HGNC)
92521 (Entrez Gene)
608793 (OMIM)
SPECC1 (MyGene.info)
HGNC homology
Chr17 p11.2 Chr17:20009301-20319026 (+)
GRCh38.p7
Q5M775 (UniProt | EBI)
NM_001033555 (RefSeq)
mouse Specc1 MGI:2442356 (MGI)
432572 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr11 37.96 cM Chr11:61956763-62223013 (+)
GRCm38
432572 (NCBI Gene Model)
Q5SXY1 (UniProt | EBI)
NM_001281818 (RefSeq)
rat Specc1 303208 (Entrez Gene)
Chr10 q22-q23 NP_001034106 (RefSeq)
NM_001039017 (RefSeq)
cattle SPECC1 506538 (Entrez Gene)
Chr19 XP_010814402 (RefSeq)
dog SPECC1 489524 (Entrez Gene)
Chr5 XP_005620166 (RefSeq)
chicken SPECC1 417595 (Entrez Gene)
Chr19 XP_415840 (RefSeq)
zebrafish specc1 562343 (Entrez Gene)
Chr5 XP_009300192 (RefSeq)
frog, western clawed specc1 100380013 (Entrez Gene)
Chr2 XP_004911747 (RefSeq)
macaque, rhesus SPECC1 704221 (Entrez Gene)
Chr16 XP_028691950 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
09/05/2019
MGI 6.14
The Jackson Laboratory