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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
4514

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PAX1 HGNC:8615 (HGNC)
5075 (Entrez Gene)
167411 (OMIM)
Chr20 p11.2 Chr20:21705659-21718486 (+)
GRCh38
Otofaciocervical Syndrome 2; OFC2
P15863 (UniProt | EBI)
NM_006192 (RefSeq)
mouse Pax1 MGI:97485 (MGI)
18503 (Entrez Gene)
Gene Tree
VISTA-Point
Chr2 72.63 cM Chr2:147361925-147393295 (+)
GRCm38
OTTMUSG00000015696 (VEGA)
OTTMUSP00000016707 (VEGA)
OTTMUST00000037303 (VEGA)
rhesus macaque PAX1 706866 (Entrez Gene)
Chr10 XP_001095275 (RefSeq)
cattle PAX1 537696 (Entrez Gene)
Chr13 XP_617873 (RefSeq)
dog PAX1 485743 (Entrez Gene)
Chr24 XP_542866 (RefSeq)
chicken PAX1 100859138 (Entrez Gene)
Chr3 XP_003640945 (RefSeq)
western clawed frog pax1 100038212 (Entrez Gene)
ChrUN XP_002939483 (RefSeq)
zebrafish pax1a 564359 (Entrez Gene)
Chr17 NP_001074061 (RefSeq)
NM_001080592 (RefSeq)
pax1b 572108 (Entrez Gene)
Chr20 XP_700877 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory