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HomoloGene Vertebrate Homology
Class ID
HomoloGene (Release 68, May 6, 2014)

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human VANGL1 HGNC:15512 (HGNC)
81839 (Entrez Gene)
610132 (OMIM)
HGNC homology
Chr1 p13.1 Chr1:115641953-115698224 (+)
neural tube defect
Q8TAA9 (UniProt | EBI)
NM_001172412 (RefSeq)
mouse Vangl1 MGI:2159344 (MGI)
229658 (Entrez Gene)
Gene Tree
HGNC homology
Chr3 44.3 cM Chr3:102153583-102204693 (-)
OTTMUSG00000031053 (VEGA)
OTTMUSP00000040562 (VEGA)
OTTMUST00000076931 (VEGA)
rat Vangl1 690366 (Entrez Gene)
Chr2 q34 NP_001103054 (RefSeq)
NM_001109584 (RefSeq)
chimpanzee VANGL1 457149 (Entrez Gene)
Chr1 XP_016780531 (RefSeq)
cattle VANGL1 513056 (Entrez Gene)
Chr3 NP_001192672 (RefSeq)
NM_001205743 (RefSeq)
dog VANGL1 483133 (Entrez Gene)
Chr17 XP_022260585 (RefSeq)
chicken VANGL1 418337 (Entrez Gene)
Chr1 XP_004938247 (RefSeq)
zebrafish vangl1 403076 (Entrez Gene)
Chr9 NP_991313 (RefSeq)
NM_205750 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
MGI 6.12
The Jackson Laboratory