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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
44540

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human VANGL1 HGNC:15512 (HGNC)
81839 (Entrez Gene)
610132 (OMIM)
Chr1 p13.1 Chr1:115641953-115698224 (+)
GRCh38
Neural Tube Defects
Sacral Defect with Anterior Meningocele
Q8TAA9 (UniProt | EBI)
NM_138959 (RefSeq)
mouse Vangl1 MGI:2159344 (MGI)
229658 (Entrez Gene)
Gene Tree
VISTA-Point
Chr3 44.3 cM Chr3:102156701-102204693 (-)
GRCm38
OTTMUSG00000031053 (VEGA)
OTTMUSP00000040562 (VEGA)
OTTMUST00000076931 (VEGA)
rat Vangl1 690366 (Entrez Gene)
Chr2 q34 NP_001103054 (RefSeq)
NM_001109584 (RefSeq)
chimpanzee VANGL1 457149 (Entrez Gene)
Chr1 XP_513676 (RefSeq)
cattle VANGL1 513056 (Entrez Gene)
Chr3 NP_001192672 (RefSeq)
NM_001205743 (RefSeq)
dog VANGL1 483133 (Entrez Gene)
Chr17 XP_540251 (RefSeq)
chicken VANGL1 418337 (Entrez Gene)
Chr1 XP_001232441 (RefSeq)
zebrafish vangl1 403076 (Entrez Gene)
Chr9 NP_991313 (RefSeq)
NM_205750 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory