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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
4440

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human NOD1 HGNC:16390 (HGNC)
10392 (Entrez Gene)
605980 (OMIM)
NOD1 (MyGene.info)
HGNC homology
Chr7 p14.3 Chr7:30424527-30478840 (-)
GRCh38.p7
Q9Y239 (UniProt | EBI)
NM_006092 (RefSeq)
mouse Nod1 MGI:1341839 (MGI)
107607 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr6 27.22 cM Chr6:54923949-54972612 (-)
GRCm38
ENSMUSG00000038058 (Ensembl Gene Model)
ENSMUSP00000130487 (Ensembl)
ENSMUST00000168172 (Ensembl)
rat Nod1 500133 (Entrez Gene)
Chr4 q24 NP_001102706 (RefSeq)
NM_001109236 (RefSeq)
chimpanzee NOD1 472336 (Entrez Gene)
Chr7 XP_016814157 (RefSeq)
cattle NOD1 781426 (Entrez Gene)
Chr4 NP_001243492 (RefSeq)
NM_001256563 (RefSeq)
dog NOD1 482382 (Entrez Gene)
Chr14 XP_013974568 (RefSeq)
chicken NOD1 420677 (Entrez Gene)
Chr2 NP_001305367 (RefSeq)
NM_001318438 (RefSeq)
zebrafish nod1 100330810 (Entrez Gene)
Chr16 XP_002665106 (RefSeq)
frog, western clawed nod1 100488164 (Entrez Gene)
Chr6 XP_012820993 (RefSeq)
macaque, rhesus NOD1 695655 (Entrez Gene)
Chr3 XP_001085719 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
04/16/2019
MGI 6.13
The Jackson Laboratory