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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
41763

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human LRRTM1 HGNC:19408 (HGNC)
347730 (Entrez Gene)
610867 (OMIM)
Chr2 p12 Chr2:80288356-80304593 (-)
GRCh38
Q86UE6 (UniProt | EBI)
NM_178839 (RefSeq)
mouse Lrrtm1 MGI:2389173 (MGI)
74342 (Entrez Gene)
Gene Tree
VISTA-Point
Chr6 33.89 cM Chr6:77242689-77257791 (+)
GRCm38
Schizophrenia; SCZD
OTTMUSG00000034534 (VEGA)
OTTMUSP00000047685 (VEGA)
OTTMUST00000087621 (VEGA)
rat LRRTM1 679668 (Entrez Gene)
Chr4 q33 D4A6D8 (UniProt | EBI)
NM_001109374 (RefSeq)
chimpanzee LRRTM1 459351 (Entrez Gene)
Chr2A XP_001164070 (RefSeq)
rhesus macaque LRRTM1 712198 (Entrez Gene)
Chr13 NP_001244396 (RefSeq)
NM_001257467 (RefSeq)
cattle LRRTM1 538452 (Entrez Gene)
Chr11 A1A4H9 (UniProt | EBI)
NM_001080304 (RefSeq)
dog LRRTM1 483089 (Entrez Gene)
Chr17 XP_540204 (RefSeq)
chicken LRRTM1 771502 (Entrez Gene)
Chr4 XP_004936330 (RefSeq)
western clawed frog lrrtm1 100493874 (Entrez Gene)
ChrUN XP_002935525 (RefSeq)
zebrafish lrrtm1 570385 (Entrez Gene)
Chr1 XP_005160139 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory