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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
416

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human ATRX HGNC:886 (HGNC)
546 (Entrez Gene)
300032 (OMIM)
ChrX q21.1 ChrX:77504878-77786269 (-)
GRCh38
Alpha-Thalassemia Myelodysplasia Syndrome; ATMDS
Alpha-Thalassemia/Mental Retardation Syndrome, X-Linked; ATRX
Mental Retardation-Hypotonic Facies Syndrome, X-Linked, 1; MRXHF1
P46100 (UniProt | EBI)
NM_000489 (RefSeq)
mouse Atrx MGI:103067 (MGI)
22589 (Entrez Gene)
Gene Tree
VISTA-Point
ChrX 47.26 cM ChrX:105797615-105929397 (-)
GRCm38
Alpha-Thalassemia/Mental Retardation Syndrome, X-Linked; ATRX
OTTMUSG00000018268 (VEGA)
OTTMUSP00000019840 (VEGA)
OTTMUST00000044133 (VEGA)
rat Atrx 246284 (Entrez Gene)
ChrX q31 P70486 (UniProt | EBI)
NM_001105757 (RefSeq)
chimpanzee ATRX 449625 (Entrez Gene)
ChrX Q7YQM4 (UniProt | EBI)
NM_001009018 (RefSeq)
rhesus macaque ATRX 705735 (Entrez Gene)
ChrX XP_001099671 (RefSeq)
cattle ATRX 514473 (Entrez Gene)
ChrX XP_592333 (RefSeq)
dog ATRX 480963 (Entrez Gene)
ChrX XP_538084 (RefSeq)
chicken ATRX 422331 (Entrez Gene)
Chr4 XP_420305 (RefSeq)
western clawed frog atrx 100380046 (Entrez Gene)
ChrUN XP_002931858 (RefSeq)
zebrafish atrx 323299 (Entrez Gene)
Chr14 NP_956947 (RefSeq)
NM_200653 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/16/2014
MGI 5.19
The Jackson Laboratory