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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
4138

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human TRAF1 HGNC:12031 (HGNC)
7185 (Entrez Gene)
601711 (OMIM)
TRAF1 (MyGene.info)
HGNC homology
Chr9 q33.2 Chr9:120902393-120929173 (-)
GRCh38.p7
Q13077 (UniProt | EBI)
NM_001190947 (RefSeq)
mouse Traf1 MGI:101836 (MGI)
22029 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr2 23.13 cM Chr2:34941750-34961772 (-)
GRCm38
ENSMUSG00000026875 (Ensembl Gene Model)
ENSMUSP00000130759 (Ensembl)
ENSMUST00000172159 (Ensembl)
rat Traf1 687813 (Entrez Gene)
Chr3 NP_001258169 (RefSeq)
NM_001271240 (RefSeq)
chimpanzee TRAF1 743748 (Entrez Gene)
Chr9 XP_009455459 (RefSeq)
cattle TRAF1 540944 (Entrez Gene)
Chr8 NP_001179730 (RefSeq)
NM_001192801 (RefSeq)
dog TRAF1 612709 (Entrez Gene)
Chr11 XP_022280713 (RefSeq)
chicken TRAF1 417123 (Entrez Gene)
Chr17 XP_024997267 (RefSeq)
zebrafish traf1 100148503 (Entrez Gene)
Chr8 NP_001121853 (RefSeq)
NM_001128381 (RefSeq)
macaque, rhesus TRAF1 700583 (Entrez Gene)
Chr15 NP_001252822 (RefSeq)
NM_001265893 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
04/09/2019
MGI 6.13
The Jackson Laboratory