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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
41242

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human CASC1 HGNC:29599 (HGNC)
55259 (Entrez Gene)
616906 (OMIM)
HGNC homology
Chr12 p12.1 Chr12:25107057-25195177 (-)
GRCh38.p7
Q6TDU7 (UniProt | EBI)
NM_001352063 (RefSeq)
mouse Casc1 MGI:2444480 (MGI)
320662 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr6 77.37 cM Chr6:145174834-145211005 (-)
GRCm38
OTTMUSG00000023460 (VEGA)
OTTMUSP00000027475 (VEGA)
OTTMUST00000057040 (VEGA)
rat Casc1 297720 (Entrez Gene)
Chr4 q44 NP_001100097 (RefSeq)
NM_001106627 (RefSeq)
chimpanzee CASC1 465348 (Entrez Gene)
Chr12 XP_016779266 (RefSeq)
cattle CASC1 526444 (Entrez Gene)
Chr5 Q29RU8 (UniProt | EBI)
NM_001046282 (RefSeq)
dog CASC1 486630 (Entrez Gene)
Chr27 XP_022266998 (RefSeq)
chicken CASC1H 101750345 (Entrez Gene)
Chr1
zebrafish casc1 566485 (Entrez Gene)
Chr4 A6H8T2 (UniProt | EBI)
NM_001099454 (RefSeq)
macaque, rhesus CASC1 707753 (Entrez Gene)
Chr11 XP_002798537 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/31/2018
MGI 6.12
The Jackson Laboratory