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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
4118

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SOX3 HGNC:11199 (HGNC)
6658 (Entrez Gene)
313430 (OMIM)
ChrX q27.1 ChrX:140502987-140505060 (-)
GRCh38
Mental Retardation, X-Linked, with Panhypopituitarism Mental Retardation, X-Linked, with Isolated Growth Hormone Deficiency,
Panhypopituitarism, X-Linked; PHPX
P41225 (UniProt | EBI)
NM_005634 (RefSeq)
mouse Sox3 MGI:98365 (MGI)
20675 (Entrez Gene)
Gene Tree
VISTA-Point
ChrX 33.66 cM ChrX:60891366-60893430 (-)
GRCm38
Mental Retardation, X-Linked, with Panhypopituitarism Mental Retardation, X-Linked, with Isolated Growth Hormone Deficiency,
OTTMUSG00000017611 (VEGA)
OTTMUSP00000019219 (VEGA)
OTTMUST00000042794 (VEGA)
rhesus macaque SOX3 696412 (Entrez Gene)
ChrX NP_001180681 (RefSeq)
NM_001193752 (RefSeq)
dog SOX3 492178 (Entrez Gene)
ChrX XP_852934 (RefSeq)
chicken SOX3 374019 (Entrez Gene)
Chr4 P40667 (UniProt | EBI)
NM_204195 (RefSeq)
western clawed frog sox3 493228 (Entrez Gene)
ChrUN Q68FA4 (UniProt | EBI)
NM_001007501 (RefSeq)
zebrafish sox3 30529 (Entrez Gene)
Chr14 Q6EJB7 (UniProt | EBI)
NM_001001811 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory