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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
41034

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SAMM50 HGNC:24276 (HGNC)
25813 (Entrez Gene)
612058 (OMIM)
SAMM50 (MyGene.info)
HGNC homology
Chr22 q13.31 Chr22:43955381-43996532 (+)
GRCh38.p7
Q9Y512 (UniProt | EBI)
NM_015380 (RefSeq)
mouse Samm50 MGI:1915903 (MGI)
68653 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr15 39.78 cM Chr15:84192233-84214303 (+)
GRCm38
68653 (NCBI Gene Model)
Q8BGH2 (UniProt | EBI)
NM_178614 (RefSeq)
rat Samm50 300111 (Entrez Gene)
Chr7 q34 Q6AXV4 (UniProt | EBI)
NM_001004241 (RefSeq)
chimpanzee SAMM50 470281 (Entrez Gene)
Chr22 XP_001172202 (RefSeq)
cattle SAMM50 618777 (Entrez Gene)
Chr5 Q2HJ55 (UniProt | EBI)
NM_001046623 (RefSeq)
dog SAMM50 474473 (Entrez Gene)
Chr10 XP_531702 (RefSeq)
chicken SAMM50 418234 (Entrez Gene)
Chr1 NP_001264959 (RefSeq)
NM_001278030 (RefSeq)
zebrafish samm50 393111 (Entrez Gene)
Chr25 Q803G5 (UniProt | EBI)
NM_200142 (RefSeq)
frog, western clawed samm50 394743 (Entrez Gene)
ChrUN Q6P806 (UniProt | EBI)
NM_203807 (RefSeq)
macaque, rhesus SAMM50 715675 (Entrez Gene)
Chr10 NP_001248655 (RefSeq)
NM_001261726 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
01/09/2018
MGI 6.11
The Jackson Laboratory