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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
41025

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human VPS39 HGNC:20593 (HGNC)
23339 (Entrez Gene)
612188 (OMIM)
VPS39 (MyGene.info)
HGNC homology
Chr15 q15.1 Chr15:42158701-42208331 (-)
GRCh38.p7
Q96JC1 (UniProt | EBI)
NM_015289 (RefSeq)
mouse Vps39 MGI:2443189 (MGI)
269338 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr2 60.31 cM Chr2:120316461-120353137 (-)
GRCm38
ENSMUSG00000027291 (Ensembl Gene Model)
ENSMUSP00000099559 (Ensembl)
ENSMUST00000102501 (Ensembl)
rat Vps39 362199 (Entrez Gene)
Chr3 q35 NP_001012186 (RefSeq)
NM_001012186 (RefSeq)
chimpanzee VPS39 453358 (Entrez Gene)
Chr15 XP_009427164 (RefSeq)
cattle VPS39 520990 (Entrez Gene)
Chr10 NP_001193173 (RefSeq)
NM_001206244 (RefSeq)
dog VPS39 487516 (Entrez Gene)
Chr30 XP_013965043 (RefSeq)
chicken VPS39 423230 (Entrez Gene)
Chr5 NP_001026365 (RefSeq)
NM_001031194 (RefSeq)
zebrafish vps39 567078 (Entrez Gene)
Chr17 NP_001107012 (RefSeq)
NM_001113540 (RefSeq)
macaque, rhesus VPS39 707791 (Entrez Gene)
Chr7 NP_001253369 (RefSeq)
NM_001266440 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory