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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
41003

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SETX HGNC:445 (HGNC)
23064 (Entrez Gene)
608465 (OMIM)
Chr9 q34.13 Chr9:132261440-132356726 (-)
GRCh38
Amyotrophic Lateral Sclerosis 4, Juvenile; ALS4
Spinocerebellar Ataxia, Autosomal Recessive 1; SCAR1
Q7Z333 (UniProt | EBI)
NM_015046 (RefSeq)
mouse Setx MGI:2443480 (MGI)
269254 (Entrez Gene)
Gene Tree
VISTA-Point
Chr2 19.45 cM Chr2:29124181-29182471 (+)
GRCm38
OTTMUSG00000011825 (VEGA)
OTTMUSP00000012614 (VEGA)
OTTMUST00000027763 (VEGA)
rat Setx 362096 (Entrez Gene)
Chr3 p12 XP_006224386 (RefSeq)
chimpanzee SETX 464815 (Entrez Gene)
Chr9 XP_520331 (RefSeq)
rhesus macaque SETX 715065 (Entrez Gene)
Chr15 XP_002799993 (RefSeq)
cattle SETX 534284 (Entrez Gene)
Chr11 XP_001787696 (RefSeq)
dog SETX 480691 (Entrez Gene)
Chr9 XP_537811 (RefSeq)
chicken SETX 417170 (Entrez Gene)
Chr17 XP_415453 (RefSeq)
western clawed frog setx 100145435 (Entrez Gene)
ChrUN XP_002936221 (RefSeq)
zebrafish setx 562474 (Entrez Gene)
Chr21 XP_690945 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory