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HomoloGene Vertebrate Homology
Class ID
HomoloGene (Release 68, May 6, 2014)

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SETX HGNC:445 (HGNC)
23064 (Entrez Gene)
608465 (OMIM)
SETX (MyGene.info)
HGNC homology
Chr9 q34.13 Chr9:132261440-132356726 (-)
amyotrophic lateral sclerosis type 4
ataxia with oculomotor apraxia type 2
Q7Z333 (UniProt | EBI)
NM_015046 (RefSeq)
mouse Setx MGI:2443480 (MGI)
269254 (Entrez Gene)
Gene Tree
HGNC homology
Chr2 19.45 cM Chr2:29124181-29182471 (+)
OTTMUSG00000011825 (VEGA)
OTTMUSP00000012614 (VEGA)
OTTMUST00000027763 (VEGA)
rat Setx 362096 (Entrez Gene)
Chr3 p12 XP_006233948 (RefSeq)
chimpanzee SETX 464815 (Entrez Gene)
Chr9 XP_024201714 (RefSeq)
cattle SETX 534284 (Entrez Gene)
Chr11 XP_024855378 (RefSeq)
dog SETX 480691 (Entrez Gene)
Chr9 XP_013972460 (RefSeq)
chicken SETX 417170 (Entrez Gene)
Chr17 XP_415453 (RefSeq)
zebrafish setx 562474 (Entrez Gene)
Chr21 XP_009293373 (RefSeq)
frog, western clawed setx 100145435 (Entrez Gene)
Chr8 XP_002936221 (RefSeq)
macaque, rhesus SETX 715065 (Entrez Gene)
Chr15 XP_014971993 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
MGI 6.12
The Jackson Laboratory