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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
40707

 
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human OPN3 HGNC:14007 (HGNC)
23596 (Entrez Gene)
606695 (OMIM)
OPN3 (MyGene.info)
HGNC homology
Chr1 q43 Chr1:241593150-241640399 (-)
GRCh38.p7
Q9H1Y3 (UniProt | EBI)
NM_001030012 (RefSeq)
mouse Opn3 MGI:1338022 (MGI)
13603 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr1 81.66 cM Chr1:175662421-175692776 (-)
GRCm38
OTTMUSG00000021478 (VEGA)
OTTMUSP00000023881 (VEGA)
OTTMUST00000050914 (VEGA)
rat Opn3 498289 (Entrez Gene)
Chr13 q25 NP_001178862 (RefSeq)
NM_001191933 (RefSeq)
chimpanzee OPN3 457854 (Entrez Gene)
Chr1 XP_016797203 (RefSeq)
cattle OPN3 100847752 (Entrez Gene)
Chr16 XP_005228602 (RefSeq)
dog OPN3 102155438 (Entrez Gene)
Chr7 XP_013970485 (RefSeq)
chicken OPN3 428582 (Entrez Gene)
Chr3 XP_426139 (RefSeq)
zebrafish opn3 561815 (Entrez Gene)
Chr13 NP_001104634 (RefSeq)
NM_001111164 (RefSeq)
frog, western clawed opn3 100494279 (Entrez Gene)
Chr1 XP_017946446 (RefSeq)
macaque, rhesus OPN3 707436 (Entrez Gene)
Chr1 XP_001094239 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/14/2017
MGI 6.11
The Jackson Laboratory