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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
40678

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human VAMP1 HGNC:12642 (HGNC)
6843 (Entrez Gene)
185880 (OMIM)
VAMP1 (MyGene.info)
HGNC homology
Chr12 p13.31 Chr12:6462237-6470899 (-)
GRCh38.p7
spastic ataxia 1
P23763 (UniProt | EBI)
NM_199245 (RefSeq)
mouse Vamp1 MGI:1313276 (MGI)
22317 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr6 59.32 cM Chr6:125215581-125222306 (+)
GRCm38
22317 (NCBI Gene Model)
Q62442 (UniProt | EBI)
NM_001080557 (RefSeq)
chimpanzee VAMP1 749463 (Entrez Gene)
Chr12 XP_003313489 (RefSeq)
dog VAMP1 486726 (Entrez Gene)
Chr27 XP_038432497 (RefSeq)
chicken VAMP1 418273 (Entrez Gene)
Chr1 NP_001034575 (RefSeq)
NM_001039486 (RefSeq)
zebrafish vamp1 406707 (Entrez Gene)
Chr19 NP_998563 (RefSeq)
NM_213398 (RefSeq)
zgc:92912 436805 (Entrez Gene)
Chr16 NP_001002532 (RefSeq)
NM_001002532 (RefSeq)
frog, western clawed vamp1 100127560 (Entrez Gene)
Chr5 NP_001106401 (RefSeq)
NM_001112930 (RefSeq)
macaque, rhesus VAMP1 722049 (Entrez Gene)
Chr11 NP_001248260 (RefSeq)
NM_001261331 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
02/23/2021
MGI 6.16
The Jackson Laboratory