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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
38165

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SHFM1 HGNC:10845 (HGNC)
7979 (Entrez Gene)
601285 (OMIM)
Chr7 q21.3 Chr7:96688767-96709891 (-)
GRCh38
P60896 (UniProt | EBI)
NM_006304 (RefSeq)
mouse Shfm1 MGI:109238 (MGI)
20422 (Entrez Gene)
Gene Tree
VISTA-Point
Chr6 2.59 cM Chr6:6557294-6578658 (-)
GRCm38
OTTMUSG00000024492 (VEGA)
OTTMUSP00000029297 (VEGA)
OTTMUST00000060094 (VEGA)
rat Shfm1 680532 (Entrez Gene)
Chr4 q13 NP_001119562 (RefSeq)
NM_001126090 (RefSeq)
chimpanzee SHFM1 747549 (Entrez Gene)
Chr7 XP_003318642 (RefSeq)
rhesus macaque SHFM1 698349 (Entrez Gene)
Chr3 NP_001253734 (RefSeq)
NM_001266805 (RefSeq)
cattle SHFM1 767981 (Entrez Gene)
Chr4 Q3ZBR6 (UniProt | EBI)
NM_001113317 (RefSeq)
chicken SHFM1 772237 (Entrez Gene)
Chr2 NP_001078908 (RefSeq)
NM_001085439 (RefSeq)
zebrafish shfm1 322269 (Entrez Gene)
Chr19 NP_955887 (RefSeq)
NM_199593 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/23/2014
MGI 5.19
The Jackson Laboratory