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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
3800

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human CAPN1 HGNC:1476 (HGNC)
823 (Entrez Gene)
114220 (OMIM)
CAPN1 (MyGene.info)
HGNC homology
Chr11 q13.1 Chr11:65181215-65212006 (+)
GRCh38.p7
hereditary spastic paraplegia 76
P07384 (UniProt | EBI)
NM_001198868 (RefSeq)
mouse Capn1 MGI:88263 (MGI)
12333 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr19 4.34 cM Chr19:5988545-6015825 (-)
GRCm38
12333 (NCBI Gene Model)
O35350 (UniProt | EBI)
NM_007600 (RefSeq)
rat Capn1 29153 (Entrez Gene)
Chr1 q43 P97571 (UniProt | EBI)
NM_019152 (RefSeq)
chimpanzee CAPN1 451317 (Entrez Gene)
Chr11 XP_016776710 (RefSeq)
cattle CAPN1 281661 (Entrez Gene)
Chr29 Q27970 (UniProt | EBI)
NM_174259 (RefSeq)
dog CAPN1 483745 (Entrez Gene)
Chr18 XP_540866 (RefSeq)
chicken CAPN1 693249 (Entrez Gene)
Chr33 NP_001038137 (RefSeq)
NM_001044672 (RefSeq)
zebrafish si:dkeyp-50d11.2 565825 (Entrez Gene)
Chr21 XP_009293787 (RefSeq)
zgc:55262 406768 (Entrez Gene)
Chr7 NP_998624 (RefSeq)
NM_213459 (RefSeq)
frog, western clawed capn1 541455 (Entrez Gene)
Chr4 NP_001013632 (RefSeq)
NM_001013614 (RefSeq)
macaque, rhesus CAPN1 716618 (Entrez Gene)
Chr14 NP_001247634 (RefSeq)
NM_001260705 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
09/10/2019
MGI 6.14
The Jackson Laboratory