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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
380

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PDE6A HGNC:8785 (HGNC)
5145 (Entrez Gene)
180071 (OMIM)
HGNC homology
Chr5 q32 Chr5:149857956-149959518 (-)
GRCh38.p2
Retinitis Pigmentosa 43; RP43
P16499 (UniProt | EBI)
NM_000440 (RefSeq)
mouse Pde6a MGI:97524 (MGI)
225600 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr18 34.41 cM Chr18:61220482-61289924 (+)
GRCm38
Retinitis Pigmentosa; RP
OTTMUSG00000028119 (VEGA)
OTTMUSP00000035390 (VEGA)
OTTMUST00000069637 (VEGA)
rat Pde6a 307401 (Entrez Gene)
Chr18 q12.1 NP_001100856 (RefSeq)
NM_001107386 (RefSeq)
chimpanzee PDE6A 462184 (Entrez Gene)
Chr5 XP_518030 (RefSeq)
cattle PDE6A 281973 (Entrez Gene)
Chr7 P11541 (UniProt | EBI)
NM_001001526 (RefSeq)
dog PDE6A 403620 (Entrez Gene)
Chr4 Q28263 (UniProt | EBI)
NM_001003073 (RefSeq)
zebrafish pde6a 368410 (Entrez Gene)
Chr14 NP_001007161 (RefSeq)
NM_001007160 (RefSeq)
frog, western clawed pde6a 100489913 (Entrez Gene)
Chr3 XP_002936750 (RefSeq)
macaque, rhesus PDE6A 677688 (Entrez Gene)
Chr6 NP_001265408 (RefSeq)
NM_001278479 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/29/2016
MGI 6.06
The Jackson Laboratory