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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
380

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PDE6A HGNC:8785 (HGNC)
5145 (Entrez Gene)
180071 (OMIM)
Chr5 q31.2-q34 Chr5:149857956-149944793 (-)
GRCh38
Retinitis Pigmentosa 43; RP43
P16499 (UniProt | EBI)
NM_000440 (RefSeq)
mouse Pde6a MGI:97524 (MGI)
225600 (Entrez Gene)
Gene Tree
VISTA-Point
Chr18 34.41 cM Chr18:61220482-61289924 (+)
GRCm38
Retinitis Pigmentosa; RP
OTTMUSG00000028119 (VEGA)
OTTMUSP00000035390 (VEGA)
OTTMUST00000069637 (VEGA)
rat Pde6a 307401 (Entrez Gene)
Chr18 q12.1 NP_001100856 (RefSeq)
NM_001107386 (RefSeq)
chimpanzee PDE6A 462184 (Entrez Gene)
Chr5 XP_518030 (RefSeq)
rhesus macaque PDE6A 677688 (Entrez Gene)
Chr6 NP_001265408 (RefSeq)
NM_001278479 (RefSeq)
cattle PDE6A 281973 (Entrez Gene)
Chr7 P11541 (UniProt | EBI)
NM_001001526 (RefSeq)
dog PDE6A 403620 (Entrez Gene)
Chr4 Q28263 (UniProt | EBI)
NM_001003073 (RefSeq)
western clawed frog pde6a 100489913 (Entrez Gene)
ChrUN XP_002936750 (RefSeq)
zebrafish pde6a 368410 (Entrez Gene)
Chr14 NP_001007161 (RefSeq)
NM_001007160 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory