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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
37691

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PTPN12 HGNC:9645 (HGNC)
5782 (Entrez Gene)
600079 (OMIM)
PTPN12 (MyGene.info)
HGNC homology
Chr7 q11.23 Chr7:77537160-77640071 (+)
GRCh38.p7
Q05209 (UniProt | EBI)
NM_002835 (RefSeq)
mouse Ptpn12 MGI:104673 (MGI)
19248 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr5 9.83 cM Chr5:20986645-21055911 (-)
GRCm38
ENSMUSG00000028771 (Ensembl Gene Model)
ENSMUSP00000030556 (Ensembl)
ENSMUST00000030556 (Ensembl)
rat Ptpn12 117255 (Entrez Gene)
Chr4 q11 NP_476456 (RefSeq)
NM_057115 (RefSeq)
chimpanzee PTPN12 463494 (Entrez Gene)
Chr7 XP_016813126 (RefSeq)
cattle PTPN12 531877 (Entrez Gene)
Chr4 NP_001192920 (RefSeq)
NM_001205991 (RefSeq)
dog PTPN12 483277 (Entrez Gene)
Chr18 XP_005631049 (RefSeq)
chicken PTPN12 417725 (Entrez Gene)
Chr1 XP_415970 (RefSeq)
zebrafish ptpn12 393642 (Entrez Gene)
Chr4 NP_956963 (RefSeq)
NM_200669 (RefSeq)
frog, western clawed ptpn12 595058 (Entrez Gene)
Chr3 NP_001025666 (RefSeq)
NM_001030495 (RefSeq)
macaque, rhesus LOC694133 694133 (Entrez Gene)
Chr3
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory