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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
3681

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PDCD1 HGNC:8760 (HGNC)
5133 (Entrez Gene)
600244 (OMIM)
Chr2 q37.3 Chr2:241849881-241858908 (-)
GRCh38
Q15116 (UniProt | EBI)
NM_005018 (RefSeq)
mouse Pdcd1 MGI:104879 (MGI)
18566 (Entrez Gene)
Gene Tree
VISTA-Point
Chr1 47.47 cM Chr1:94038305-94052553 (-)
GRCm38
Systemic Lupus Erythematosus, Susceptibility to, 2; SLEB2
OTTMUSG00000048696 (VEGA)
OTTMUSP00000067809 (VEGA)
OTTMUST00000124694 (VEGA)
rat LOC102550808 102550808 (Entrez Gene)
Chr9
Pdcd1 301626 (Entrez Gene)
Chr9 q36 NP_001100397 (RefSeq)
NM_001106927 (RefSeq)
chimpanzee PDCD1 748796 (Entrez Gene)
Chr2B XP_003950066 (RefSeq)
rhesus macaque PDCD1 100135775 (Entrez Gene)
Chr12 NP_001107830 (RefSeq)
NM_001114358 (RefSeq)
cattle PDCD1 613842 (Entrez Gene)
Chr3 NP_001076975 (RefSeq)
NM_001083506 (RefSeq)
dog PDCD1 486213 (Entrez Gene)
Chr25 XP_543338 (RefSeq)
chicken PDCD1 424913 (Entrez Gene)
Chr9 XP_422723 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory