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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
3659

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human MMP9 HGNC:7176 (HGNC)
4318 (Entrez Gene)
120361 (OMIM)
Chr20 q11.2-q13.1 Chr20:46008908-46016561 (+)
GRCh38
Metaphyseal Anadysplasia 2; MANDP2
P14780 (UniProt | EBI)
NM_004994 (RefSeq)
mouse Mmp9 MGI:97011 (MGI)
17395 (Entrez Gene)
Gene Tree
VISTA-Point
Chr2 85.27 cM Chr2:164940780-164955850 (+)
GRCm38
OTTMUSG00000001184 (VEGA)
OTTMUSP00000001145 (VEGA)
OTTMUST00000002322 (VEGA)
rat Mmp9 81687 (Entrez Gene)
Chr3 q42 P50282 (UniProt | EBI)
NM_031055 (RefSeq)
chimpanzee MMP9 458294 (Entrez Gene)
Chr20 XP_003317021 (RefSeq)
rhesus macaque MMP9 708084 (Entrez Gene)
Chr10 NP_001253834 (RefSeq)
NM_001266905 (RefSeq)
cattle MMP9 282871 (Entrez Gene)
Chr13 P52176 (UniProt | EBI)
NM_174744 (RefSeq)
dog MMP9 403885 (Entrez Gene)
Chr24 O18733 (UniProt | EBI)
NM_001003219 (RefSeq)
chicken MMP9 395387 (Entrez Gene)
Chr20 NP_989998 (RefSeq)
NM_204667 (RefSeq)
western clawed frog LOC100494738 100494738 (Entrez Gene)
ChrUN XP_002932554 (RefSeq)
mmp9 448591 (Entrez Gene)
ChrUN NP_001006843 (RefSeq)
NM_001006842 (RefSeq)
zebrafish mmp9 406397 (Entrez Gene)
Chr8 NP_998288 (RefSeq)
NM_213123 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory