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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 67, Dec 12, 2012)
3476

 
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SLC33A1 HGNC:95 (HGNC)
9197 (Entrez Gene)
603690 (OMIM)
Chr3 q25.31 Chr3:155826511-155854459 (-)
GRCh38
Congenital Cataracts, Hearing Loss, and Neurodegeneration; CCHLND
Spastic Paraplegia 42, Autosomal Dominant; SPG42
O00400 (UniProt | EBI)
NM_004733 (RefSeq)
mouse Slc33a1 MGI:1332247 (MGI)
11416 (Entrez Gene)
Gene Tree
VISTA-Point
Chr3 30.08 cM Chr3:63933507-63964768 (-)
GRCm38
OTTMUSG00000026586 (VEGA)
OTTMUSP00000032828 (VEGA)
OTTMUST00000065779 (VEGA)
rat Slc33a1 64018 (Entrez Gene)
Chr2 q31 Q6AYY8 (UniProt | EBI)
NM_022252 (RefSeq)
chimpanzee SLC33A1 460796 (Entrez Gene)
Chr3 XP_516831 (RefSeq)
rhesus macaque LOC721420 721420 (Entrez Gene)
Chr2 XP_002803133 (RefSeq)
cattle SLC33A1 517797 (Entrez Gene)
Chr1 NP_001069226 (RefSeq)
NM_001075758 (RefSeq)
dog SLC33A1 485724 (Entrez Gene)
Chr23 XP_542846 (RefSeq)
chicken SLC33A1 425029 (Entrez Gene)
Chr9 XP_422831 (RefSeq)
zebrafish slc33a1 394083 (Entrez Gene)
Chr18 NP_957402 (RefSeq)
NM_201108 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory