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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
3447

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PRPF3 HGNC:17348 (HGNC)
9129 (Entrez Gene)
607301 (OMIM)
Chr1 q21.1 Chr1:150321479-150353228 (+)
GRCh38
Retinitis Pigmentosa 18; RP18
O43395 (UniProt | EBI)
NM_004698 (RefSeq)
mouse Prpf3 MGI:1918017 (MGI)
70767 (Entrez Gene)
Gene Tree
VISTA-Point
Chr3 41.25 cM Chr3:95830124-95855885 (-)
GRCm38
Retinitis Pigmentosa 18; RP18
OTTMUSG00000030680 (VEGA)
OTTMUSP00000039899 (VEGA)
OTTMUST00000075939 (VEGA)
rat Prpf3 361995 (Entrez Gene)
Chr2 q34 NP_001102029 (RefSeq)
NM_001108559 (RefSeq)
chimpanzee PRPF3 457272 (Entrez Gene)
Chr1 NP_001233355 (RefSeq)
NM_001246426 (RefSeq)
rhesus macaque PRPF3 706898 (Entrez Gene)
Chr1 XP_001100915 (RefSeq)
cattle PRPF3 510322 (Entrez Gene)
Chr3 Q2KIA6 (UniProt | EBI)
NM_001046051 (RefSeq)
dog PRPF3 100855927 (Entrez Gene)
Chr17 XP_003639679 (RefSeq)
chicken PRPF3 426667 (Entrez Gene)
Chr25 Q5ZJ85 (UniProt | EBI)
NM_001031390 (RefSeq)
western clawed frog prpf3 447950 (Entrez Gene)
ChrUN NP_001107672 (RefSeq)
NM_001114200 (RefSeq)
zebrafish prpf3 403072 (Entrez Gene)
Chr16 NP_991311 (RefSeq)
NM_205748 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory