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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
32718

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human LCA5 HGNC:31923 (HGNC)
167691 (Entrez Gene)
611408 (OMIM)
LCA5 (MyGene.info)
HGNC homology
Chr6 q14.1 Chr6:79484991-79537430 (-)
GRCh38.p7
Leber congenital amaurosis 5
Q86VQ0 (UniProt | EBI)
NM_181714 (RefSeq)
mouse Lca5 MGI:1923032 (MGI)
75782 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr9 45.42 cM Chr9:83390293-83441127 (-)
GRCm38
Leber congenital amaurosis 5
ENSMUSG00000032258 (Ensembl Gene Model)
ENSMUSP00000034791 (Ensembl)
ENSMUST00000034791 (Ensembl)
rat Lca5 300866 (Entrez Gene)
Chr8 q31 Q5U2Y9 (UniProt | EBI)
NM_001013954 (RefSeq)
chimpanzee LCA5 472060 (Entrez Gene)
Chr6 XP_009449860 (RefSeq)
cattle LCA5 537291 (Entrez Gene)
Chr9 XP_005210746 (RefSeq)
dog LCA5 481893 (Entrez Gene)
Chr12 XP_005627615 (RefSeq)
chicken LCA5 421852 (Entrez Gene)
Chr3 XP_004940478 (RefSeq)
zebrafish lca5 100151323 (Entrez Gene)
Chr23 XP_009295281 (RefSeq)
frog, western clawed lca5 100496849 (Entrez Gene)
Chr5 XP_002936257 (RefSeq)
LOC100497171 100497171 (Entrez Gene)
Chr5 XP_002937268 (RefSeq)
macaque, rhesus LCA5 716999 (Entrez Gene)
Chr4 NP_001253273 (RefSeq)
NM_001266344 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
08/04/2020
MGI 6.15
The Jackson Laboratory