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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
32377

 
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PRPF39 HGNC:20314 (HGNC)
55015 (Entrez Gene)
614907 (OMIM)
HGNC homology
Chr14 q21.2 Chr14:45084099-45115601 (+)
GRCh38.p7
Q86UA1 (UniProt | EBI)
NM_018333 (RefSeq)
mouse Prpf39 MGI:104602 (MGI)
328110 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr12 27.21 cM Chr12:65036334-65063386 (+)
GRCm38
328110 (NCBI Gene Model)
Q8K2Z2 (UniProt | EBI)
NM_001374213 (RefSeq)
rat Prpf39 314171 (Entrez Gene)
Chr6 q24 NP_001101496 (RefSeq)
NM_001108026 (RefSeq)
chimpanzee PRPF39 739795 (Entrez Gene)
Chr14 XP_009426030 (RefSeq)
cattle PRPF39 505547 (Entrez Gene)
Chr21 NP_001103259 (RefSeq)
NM_001109789 (RefSeq)
dog PRPF39 480305 (Entrez Gene)
Chr8 XP_038464673 (RefSeq)
chicken PRPF39 100858094 (Entrez Gene)
Chr5 XP_015132270 (RefSeq)
zebrafish prpf39 368864 (Entrez Gene)
Chr20 Q1JPZ7 (UniProt | EBI)
NM_001004520 (RefSeq)
macaque, rhesus PRPF39 702306 (Entrez Gene)
Chr7 XP_028707362 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
04/06/2021
MGI 6.16
The Jackson Laboratory